The Pathogenesis of Human Disease 1 unit of study modules will provide a theoretical background to the scientific basis of the pathogenesis of disease. Areas covered in theoretical modules include: tissue responses to exogenous factors, adaptive responses to foreign agents, cardiovascular/pulmonary/gut responses to disease, forensic science, neuropathology and cancer. The aims of the course are: - To give students an overall understanding of the fundamental biological mechanisms governing disease pathogenesis in human beings. - To introduce to students basic concepts of the pathogenesis, natural history and complications of common human diseases. - To demonstrate and exemplify differences between normality and disease. - To explain cellular aspects of certain pathological processes. Together with CPAT3202, the unit of study would be appropriate for those who intend to proceed to Honours research, to postgraduate studies such as Medicine or to careers in biomedical areas such as hospital science. Enquires should be directed to anthea.matsimanis@sydney.edu.au

The Pathogenesis of Human Disease 2 unit of study modules will provide a practical background to the scientific basis of the pathogenesis of disease. Areas covered in practical modules include disease specimen evaluation on a macroscopic and microscopic basis. The aims of the course are: - To enable students to gain an understanding of how different organ systems react to injury and to apply basic concepts of disease processes. - To equip students with skills appropriate for careers in the biomedical sciences and for further training in research or professional degrees. At the end of the course students will: - Have acquired practical skills in the use of a light microscope. - Have an understanding of basic investigative techniques for disease detection in pathology. - Be able to evaluate diseased tissue at the macroscopic and microscopic level. - Have the ability to describe, synthesise and present information on disease pathogenesis. - Transfer problem-solving skills to novel situations related to disease pathogenesis. This unit of study would be appropriate for those who intend to proceed to Honours research, to postgraduate studies such as Medicine or to careers in biomedical areas such as hospital science. Enquiries should be directed to anthea.matsimanis@sydney.edu.au.

What does it mean when someone tells you: "you have cancer"? Initially you're probably consumed with questions like: "how did this happen?" and "will this cancer kill me?". In this unit, we will explore all aspects of the "cancer problem" from the underlying biomedical and environmental causes, through to emerging approaches to cancer diagnosis and treatment. You will integrate medical science knowledge from a diverse range of disciplines and apply this to the prevention, diagnosis and treatment of cancer both at the individual and community level. Together we will explore the epidemiology, aetiology and pathophysiology of cancer. You will be able to define problems and formulate solutions related to the study, prevention and treatment of cancer with consideration throughout for the economic, social and psychological costs of a disease that affects billions. Face-to-face and online learning activities will allow you to work effectively in individual and collaborative contexts. You will acquire the skills to interpret and communicate observations and experimental findings related to the "cancer problem" to diverse audiences. Upon completion, you will have developed the foundations that will allow you to follow a career in cancer research, clinical and diagnostic cancer services and/or the corporate system that supports the health care system.

Biotechnological advances have given rise to an explosion of original and shared public data relevant to human health. These data, including the monitoring of expression levels for thousands of genes and proteins simultaneously, together with multiple databases on biological systems, now promise exciting, ground-breaking discoveries in complex diseases. Critical to these discoveries will be our ability to unravel and extract information from these data. In this unit, you will develop analytical skills required to work with data obtained in the medical and diagnostic sciences. You will explore clinical data using powerful, state of the art methods and tools. Using real data sets, you will be guided in the application of modern data science techniques to interrogate, analyse and represent the data, both graphically and numerically. By analysing your own real data, as well as that from large public resources you will learn and apply the methods needed to find information on the relationship between genes and disease. Leveraging expertise from multiple sources by working in team-based collaborative learning environments, you will develop knowledge and skills that will enable you to play an active role in finding meaningful solutions to difficult problems, creating an important impact on our lives.

Diagnostic sciences have evolved at a rapid pace and provide the cornerstone of our health care system. Effective diagnostic assays enable the identification of people who have, or are at risk of, a disease, and guide their treatment. Research into the pathophysiology of disease underpins the discovery of novel biomarkers and in turn, the development of revolutionary diagnostic assays that make use of state-of-the-art molecular and cellular methods. In this unit you will explore a diverse range of diagnostic tests and gain valuable practical experience in a number of core diagnostic methodologies, many of which are currently used in hospital laboratories. Together we will also cover the regulatory, social, and ethical aspects of the use of biomarkers and diagnostic tests and explore the pathways to their translation into clinical practice. By undertaking this unit, you will develop your understanding of diagnostic assays and biomarkers and acquire the skills needed to embark on a career in diagnostic sciences.

Clinical science is a multidisciplinary science that combines the principles of experimental science with translational medicine. As a clinical scientist, you will have the capacity to interpret test results, isolate causes of disease, and ultimately develop new treatments that will save lives. Clinical Science will provide you with the breadth and depth of knowledge and skills that will give you a broad foundation of knowledge and open up a range of career opportunities in clinical sciences, including medical research, pharmaceutical development and clinical diagnostics. You will learn the language of the clinical world as you develop expertise in literature searching, study design, data interrogation and interpretation, evidence-based decision-making, and current knowledge in medical research. You will explore how discoveries in the medical sciences are translated into clinical practice, and pose your own clinical questions for investigation. You will study important medical conditions from the areas of infectious and genetic diseases and immunity. The capstone experience of your study in Clinical Science will be a short internship in a sector of the clinical sciences of your interest, such as a diagnostic lab, a research lab or a clinical trials centre.

The aims of this unit of study are to provide a theoretical understanding of why biological tissues need to be specifically prepared for microscopic examination, how differing methods yield different types of morphological information; to allow students to study the theory of different types and modalities of microscopes, how they function and the differing information they provide; to develop an understanding of the theory of why biological material needs to be stained for microscopic examination; to allow students to understand how biological material becomes stained; to develop an understanding of the chemical information provided by biological staining - dyes, enzymes and antibodies.

The aims of this unit of study are to provide a practical understanding of why biological tissues need to be specifically prepared for microscopic examination, how differing methods yield different types of morphological information; to allow students to study the theory of different types and modalities of microscopes, how they function and the differing information they provide; to develop an practical understanding of why biological material needs to be stained for microscopic examination; to allow students to understand how biological material becomes stained; to develop an understanding of the chemical information provided by biological staining - dyes, enzymes and antibodies.

The main emphasis of this unit of study concerns the mechanisms that control animal development. Early developmental processes including fertilisation, cleavage, and gastrulation leading to the formation of the primary germ layers and subsequent body organs are described in a range of animals, mainly vertebrates. Stem cells of both embryonic and adult origin will be covered. Emphasis will be placed on the parts played by inductive cell and tissue interactions in cell and tissue differentiation, morphogenesis and pattern formation. This will be studied at both cellular and molecular levels.

This advanced unit of study complements HSTO3003 (Cells and Development: Theory) and is catered to provide students with laboratory research experience leading to Honours and higher degrees. It will primarily cover the design and application of experimental procedures involved in cell and developmental biology, using appropriate molecular and cellular techniques to answer developmental questions raised in HSTO3003. This unit of study will promote hands on experience, allowing students to observe and examine developing and differentiating tissues at the macroscopic and microscopic level. The main emphasis of this unit of study will concentrate on practical approaches to understanding the mechanisms that control animal development. Some projects may examine early developmental processes such as fertilization, cleavage, gastrulation and the formation of the primary germ layers and tissues. The parts played by stem cells and inductive cell and tissue interactions in differentiation, morphogenesis and pattern formation can also be examined at cellular and molecular levels.

This unit of study is designed to provide a comprehensive coverage of the activity of genes in living organisms, with a focus on eukaryotic and particularly human systems. The lecture component covers the arrangement and structure of genes, how genes are expressed, promoter activity and enhancer action. This leads into discussions on the biochemical basis of differentiation of eukaryotic cells, the molecular basis of imprinting, epigenetics, and the role of RNA in gene expression. Additionally, the course discusses the effects of damage to the genome and mechanisms of DNA repair. The modern techniques for manipulating and analysing macromolecules such as DNA and proteins and their relevance to medical and biotechnological applications are discussed. Techniques such as the generation of gene knockout and transgenic mice are discussed as well as genomic methods of analysing gene expression patterns. Particular emphasis is placed on how modern molecular biology and biochemical methods have led to our current understanding of the structure and functions of genes within the human genome. The practical course is designed to complement the lecture course and will provide students with experience in a wide range of techniques used in molecular biology laboratories.

This unit of study is designed to provide a comprehensive coverage of the activity of genes in living organisms, with a focus on eukaryotic and particularly human systems. The lecture component covers the arrangement and structure of genes, how genes are expressed, promoter activity and enhancer action. This leads into discussions on the biochemical basis of differentiation of eukaryotic cells, the molecular basis of imprinting, epigenetics, and the role of RNA in gene expression. Additionally, the course discusses the effects of damage to the genome and mechanisms of DNA repair. The modern techniques for manipulating and analysing macromolecules such as DNA and proteins and their relevance to medical and biotechnological applications are discussed. Techniques such as the generation of gene knockout and transgenic mice are discussed as well as genomic methods of analysing gene expression patterns. Particular emphasis is placed on how modern molecular biology and biochemical methods have led to our current understanding of the structure and functions of genes within the human genome. The practical course is designed to complement the lecture course and will provide students with experience in a wide range of techniques used in molecular biology laboratories.
The lecture component of this unit of study is the same as BCHM3071. Qualified students will attend seminars/practical classes in which more sophisticated topics in gene expression and manipulation will be covered.

This unit of study will explore the responses of cells to changes in their environment in both health and disease. The lecture course consists of four integrated modules. The first will provide an overview of the role of signalling mechanisms in the control of human cell biology and then focus on cell surface receptors and the downstream signal transduction events that they initiate. The second will examine how cells detect and respond to pathogenic molecular patterns displayed by infectious agents and injured cells by discussing the roles of relevant cell surface receptors, cytokines and signal transduction pathways. The third and fourth will focus on the life, death and differentiation of human cells in response to intra-cellular and extra-cellular signals by discussing the eukaryotic cell cycle under normal and pathological circumstances and programmed cell death in response to abnormal extra-cellular and intra-cellular signals. In all modules emphasis will be placed on the molecular processes involved in human cell biology, how modern molecular and cell biology methods have led to our current understanding of them and the implications of them for pathologies such as cancer. The practical component is designed to complement the lecture course, providing students with experience in a wide range of techniques used in modern molecular cell biology.

This unit of study will explore the responses of cells to changes in their environment in both health and disease. The lecture course consists of four integrated modules. The first will provide an overview of the role of signalling mechanisms in the control of human cell biology and then focus on cell surface receptors and the downstream signal transduction events that they initiate. The second will examine how cells detect and respond to pathogenic molecular patterns displayed by infectious agents and injured cells by discussing the roles of relevant cell surface receptors, cytokines and signal transduction pathways. The third and fourth will focus on the life, death and differentiation of human cells in response to intra-cellular and extra-cellular signals by discussing the eukaryotic cell cycle under normal and pathological circumstances and programmed cell death in response to abnormal extra-cellular and intra-cellular signals. In all modules emphasis will be placed on the molecular processes involved in human cell biology, how modern molecular and cell biology methods have led to our current understanding of them and the implications of them for pathologies such as cancer. The practical component is designed to complement the lecture course, providing students with experience in a wide range of techniques used in modern molecular cell biology.
The lecture component of this unit of study is the same as BCHM3072. Qualified students will attend seminars/practical classes in which more sophisticated topics in modern molecular cell biology will be covered.

This unit of study is designed to provide a comprehensive coverage of the functions of proteins in living organisms, with a focus on eukaryotic and particularly human systems. Its lecture component deals with how proteins adopt their biologically active forms, including discussions of protein structure, protein folding and how recombinant DNA technology can be used to design novel proteins with potential medical or biotechnology applications. Particular emphasis is placed on how modern molecular biology and biochemical methods have led to our current understanding of the structure and functions of proteins. It also covers physiologically and medically important aspects of proteins in living systems, including the roles of chaperones in protein folding inside cells, the pathological consequences of misfolding of proteins, how proteins are sorted to different cellular compartments and how the biological activities of proteins can be controlled by regulated protein degradation. The practical course is designed to complement the lecture course and will provide students with experience in a wide range of techniques used in molecular biology and protein biochemistry laboratories.

This unit of study is designed to provide a comprehensive coverage of the functions of proteins in living organisms, with a focus on eukaryotic and particularly human systems. Its lecture component deals with how proteins adopt their biologically active forms, including discussions of protein structure, protein folding and how recombinant DNA technology can be used to design novel proteins with potential medical or biotechnology applications. Particular emphasis is placed on how modern molecular biology and biochemical methods have led to our current understanding of the structure and functions of proteins. It also covers physiologically and medically important aspects of proteins in living systems, including the roles of chaperones in protein folding inside cells, the pathological consequences of misfolding of proteins, how proteins are sorted to different cellular compartments and how the biological activities of proteins can be controlled by regulated protein degradation. The practical course is designed to complement the lecture course and will provide students with experience in a wide range of techniques used in molecular biology and protein biochemistry laboratories.
The lecture component of this unit of study is the same as BCHM3081. Qualified students will attend seminars/practical classes in which more sophisticated topics in protein biochemistry will be covered.

This unit of study will explore the biochemical processes involved in the operation of cells and how they are integrated in tissues and in the whole human body in normal and diseased states. These concepts will be illustrated by considering whole-body aspects of energy utilisation, fat and glycogen storage and their regulation under normal conditions compared to obesity and diabetes. Key concepts that will be discussed include energy balance, regulation of metabolic rate, control of food intake, tissue interactions in fuel selection, the role of adipose tissue and transport of fuel molecules from storage organs and into cells. Particular emphasis will be placed on how the modern concepts of metabolomics, coupled with molecular biology methods and studies of the structure and function of enzymes, have led to our current understanding of how metabolic processes are normally integrated and how they become deranged in disease states. The practical component is designed to complement the lecture course and will provide students with experience in a wide range of techniques used in modern medical and metabolic biochemistry.

This unit of study will explore the biochemical processes involved in the operation of cells and how they are integrated in tissues and in the whole human body in normal and diseased states. These concepts will be illustrated by considering whole-body aspects of energy utilisation, fat and glycogen storage and their regulation under normal conditions compared to obesity and diabetes. Key concepts that will be discussed include energy balance, regulation of metabolic rate, control of food intake, tissue interactions in fuel selection, the role of adipose tissue and transport of fuel molecules from storage organs and into cells. Particular emphasis will be placed on how the modern concepts of metabolomics, coupled with new methods, including magnetic resonance techniques and molecular biology methods, as well as studies of the structure and function of enzymes, have led to our current understanding of how metabolic processes are normally integrated and how they become deranged in disease states. The practical component is designed to complement the lecture course and will provide students with experience in a wide range of techniques used in modern medical and metabolic biochemistry. Qualified students will attend some lectures/practical classes in common with BCHM3082 and some separate lectures/ practical classes in which more sophisticated topics in metabolic biochemistry will be covered.

This unit is designed to further develop an interest in, and understanding of, medical microbiology from the introduction in Intermediate Microbiology. Through an examination of microbial structure, virulence, body defences and pathogenesis, the process of acquisition and establishment of disease is covered. The unit is divided into three themes: 1. Clinical Microbiology: host defences, infections, virulence mechanisms; 2. Public health microbiology: epidemiology, international public health, transmission, water and food borne outbreaks; 3. Emerging and re-emerging diseases: the impact of societal change with respect to triggering new diseases and causing the re-emergence of past problems, which are illustrated using case studies. The practical component is designed to enhance students' practical skills and to complement the lecture series. In these practical sessions experience will be gained handling live, potentially pathogenic microbes. Clinical tutorial sessions underpin and investigate the application of the material covered in the practical classes.

This unit is available to students who have performed well in Intermediate Microbiology. This unit is designed to further develop an interest in, and understanding of, medical microbiology from the introduction in Intermediate Microbiology. Through an examination of microbial structure, virulence, body defences and pathogenesis, the process of acquisition and establishment of disease is covered. The unit is divided into three themes: 1. Clinical Microbiology: host defences, infections, virulence mechanisms; 2. Public health microbiology: epidemiology, international public health, transmission, water and food borne outbreaks; 3. Emerging and re-emerging diseases: the impact of societal change with respect to triggering new diseases and causing the re-emergence of past problems, which are illustrated using case studies. The unique aspect of this advanced unit that differentiates it from the mainstream unit is six tutorial style sessions that replace six mainstream lectures in the theme 'Emerging and re-emerging diseases'. These dedicated research-led interactive advanced sessions support self-directed learning and involve discussion around specific topics that will vary from year to year. Nominated research papers and reviews in the topic area will be explored with supported discussion of the relevance to and impact of the work on current thinking around emergence of microbial disease. The focus will be on microbial change that lies critically at the centre of understanding the reasons for the emergence of new diseases and challenges in an era of significant scientific ability to diagnose and treat infection. The practical component is identical to the mainstream unit and is designed to enhance students' practical skills and to complement the lectures. In these practical sessions experience will be gained handling live, potentially pathogenic microbes. Clinical tutorial sessions underpin and investigate the application of the material covered in the practical classes.

This Unit of Study introduces students to key concepts in cellular and molecular microbiology. Building on knowledge gained in MICR2021 and MICR2022, as well as MBLG1001, the lectures explore areas of microbial evolution, pathogenesis, physiology, ecology, biotechnology and genetics, with each key theme explored with a series of 6 lectures led by an expert in the field. Lectures will be complemented with practical/tutorial sessions that explore recent research in these areas. The first set of practical/tutorial sessions are small-group sessions led by demonstrators, that are focused on critical interpretation of the scientific literature in the area of host-microbe interactions. The focus is on experimental design, and analysis of the raw data. The second set of pracs are bioinformatics labs, which introduce software such as ORF Finder, BLAST, ClustalX, and TreeView and databases such as NCBI-Nucleotide and KEGG; the aim is to figure out the identity, functions, and biotechnological applications of a mystery piece of microbial DNA. It is recommended that students also take the complementary unit of study MICR3042 or MICR3942.

This unit of study introduces students to key concepts in cellular and molecular microbiology. Building on knowledge gained in MICR2021 and MICR2022, as well as MBLG1001, the lectures explore areas of microbial evolution, pathogenesis, physiology, ecology, biotechnology and genetics, with each key theme explored with a series of 6 lectures led by an expert in the field.The first set of practical/tutorial sessions are small-group sessions led by an academic, which are focused on critical interpretation of the scientific literature in the area of host-microbe interactions. The focus is on evaluating the scientific significance of published papers, and determining the level of experimental support for key conclusions. The second set of prac sessions teaches the creative presentation of science to both fellow scientists and the public by designing a website around an area of interest in microbiology. It is recommended that students also take the complementary unit of study, MICR3042 or MICR3942.

Research in molecular microbiology is needed to tackle problems in medicine, agriculture, environmental science, and biotechnology. This Unit of Study focuses on developing practical skills and training in experimental approaches and that are essential for laboratory research in molecular microbiology, together with knowledge of the underlying theoretical concepts. We will focus on key areas of modern microbiology including Bioremediation, where micro-organisms are used to break down harmful substrates in the environment; Microbial biotechnology, which explores how microbes can be used as cellular factories to produce useful products; Medical microbiology, where molecular epidemiology is used to track a disease outbreak, and Yeast genetics, where we explore genes and protein interaction networks that cells regulate in their response to antibiotic agents. It is strongly recommended that students also take the complementary unit of study MICR3032 or MICR3932.

Research in molecular microbiology is needed to tackle problems in medicine, agriculture, environmental science, and biotechnology. This Unit of Study focuses on developing practical skills and training in experimental approaches that are essential for laboratory research in molecular microbiology, together with knowledge of the underlying theoretical concepts. In this Unit the practical component is entirely replaced by a research project undertaken in an academic microbiology lab. The lecture material in MICR3942 focuses on the areas of microbial biotechnology and bioremediation, and the genetic and molecular diversity of medically important eukaryotic microbes. It is strongly recommended that students also take the complementary unit of study, MICR3032 or MICR3932.

The aim of this unit is to provide students with advanced knowledge of cellular physiology. There will be a detailed exploration of the signals and pathways cells use to detect and respond to environmental changes and cues. Important signalling systems and homeostatic regulators will be discussed in the context of biological processes and human diseases. Problem-based learning sessions will explore these diseases with student-led teaching. Practical classes will explore physiological techniques for investigating cell signalling and the biophysical properties of cells. Large class tutorials will focus on graduate attribute skills development in the context of reinforcing material discussed in the lectures and practical classes. This unit will develop key attributes that are essential for a science graduate as they move forward in their careers.

The aim of this unit is to provide students with advanced knowledge of cellular physiology. There will be a detailed exploration of the signals and pathways cells use to detect and respond to environmental changes and cues. Important signalling systems and homeostatic regulators will be discussed in the context of biological processes and human diseases. Problem-based learning sessions will explore these diseases with student-led teaching. Practical classes will explore physiological techiques for investigating cell signalling and biophysical properties of cells. Large class tutorials will focus on graduate attribute skills development in the context of reinforcing material discussed in the lectures and practical classes. This unit will develop key attributes that are essential for science a graduate as they move forward in their careers.

The aim of this unit is to provide students with advanced knowledge of the physiological processes that regulate normal and how these may go awry leading to significant human conditions or even disease. Lectures will focus on; male and female reproductive physiology, endocrinology of reproduction, physiology of fertilisation, cell cycle control and apoptosis, mechanisms of differentiation, gastrulation, cardiovascular development, tissue formation and organogenesis, stem cell biology and the link between developmental processes and cancer. Reprogramming and tissue regeneration will also feature in the lecture content. Problem-based learning will focus on reproductive physiology and regeneration. Practical classes will examine the processes regulating sperm function, embryogenesis and stem cell biology.

The aim of this unit is to provide students with advanced knowledge of the physiological processes that regulate normal and how these may go awry leading to significant human conditions or even disease. Lectures will focus on; male and female reproductive physiology, endocrinology of reproduction, physiology of fertilisation, cell cycle control and apoptosis, mechanisms of differentiation, gastrulation, cardiovascular development, tissue formation and organogenesis, stem cell biology and the link between developmental processes and cancer. Reprogramming and tissue regeneration will also feature in the lecture content. . Practical classes will examine the processes regulating sperm function, embryogenesis and stem cell biology. Students enrolling in PHSI3910 complete a separate laboratory class centered on stem cell differentiation to replace the problem-based learning exercises in PHSI3010.